PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G188200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 332aa    MW: 35916.1 Da    PI: 9.1058
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G188200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.56.5e-33732131128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                         lp+G++F+Ptd+el+ e+L+ k++ ++      ++++  +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++    
  Brast01G188200.1.p  73 LPAGVKFDPTDQELL-EHLEGKARPDTrklhplIDEFIpAIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeq 161
                         799************.99****999985665543333334766657**********.555555677******************7444565 PP

                 NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Brast01G188200.1.p 162 ggETRWHKTGKTRPVFT-DGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 213
                         55778************.99************6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-3765232IPR003441NAC domain
PROSITE profilePS5100532.86673232IPR003441NAC domain
PfamPF023655.2E-1574213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLASA AAVAAAAKKQ QQQQQQQQAS SHVSLVRTCP ACGHHAQYEQ  60
LQAAATIQDL PGLPAGVKFD PTDQELLEHL EGKARPDTRK LHPLIDEFIP AIEGENGICY  120
THPERLPGVG KDGLIRHFFH RPSKAYTTGT RKRRKVHTDE QGGETRWHKT GKTRPVFTDG  180
KLKGYKKILV LYTNYGKQRK PEKTNWVMHQ YHLGSDEEEK DGELVVSKVF FQTQPRQCGG  240
STAAAAAGSS IKSAAAAAAE HHQRQNDGGN NNNSMLKEAA AGMVDFYSPA LIGYSSQAAP  300
TNNRAAAAAA AAAAHLMPNF EVHTGGTGFG P*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3596310.0AK359631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1100E16.
GenBankAK3700350.0AK370035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569537.10.0PREDICTED: NAC domain-containing protein 73 isoform X1
SwissprotO494591e-127NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0Q3R6X70.0A0A0Q3R6X7_BRADI; Uncharacterized protein
STRINGBRADI2G46197.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-116NAC domain containing protein 73